species:   Clros
pid:       PID1840
parent:    cro-mir-6
paralog:   
locus:     CADEHS020000011.2:790173-790217
matures:   ['UAGGACUCGAGUAGUUAUAAC', 'GCUGACUGCUCGAGCCCUAG']
srr:       ERR5950791
genome:    /Users/jax/+Genomes/Fungal_genomes/Clros.GCA_902827195.2_C_rosea_IK726_genomic.fa
alignment: /media/data/njohnson/+SeqLibraries/FunHP_libraries/Piombo2021-ru.ERR5950791.cram
call:      samtools view /media/data/njohnson/+SeqLibraries/FunHP_libraries/Piombo2021-ru.ERR5950791.cram CADEHS020000011.2:790173-790217

0 out of bounds
32 alignments
32 proper strand
31 stranded perfect matches

********************* ********************** 
UAGGACUCGAGUAGUUAUAACCAAGCUGACUGCUCGAGCCCUAGG
((((.((((((((((((.........)))))))))))).))))..
UAGGACUCGAGUAGUUAUAAC------------------------ l=21 a=14 c
------------------------GCUGACUGCUCGAGCCCUAG- l=20 a=0 c*
UAGGACUCGAGUAGUUAUAAC------------------------ l=21 a=14 ma
------------------------GCUGACUGCUCGAGCCCUAG- l=20 a=0 ma*

UAGGACUCGAGUAGUUAgAA------------------------- l=20 a=1 
UAGGACUCGAGUAGUUAUAA------------------------- l=20 a=2 
UAGGACUCGAGUAGUUAUAAC------------------------ l=21 a=14 (c,ma)
UAGGACUCGAGUAGUUAUAACC----------------------- l=22 a=10 
UAGGACUCGAGUAGUUAUAACCAA--------------------- l=24 a=1 
UAGGACUCGAGUAGUUAUAACCAAG-------------------- l=25 a=3 
UAGGACUCGAGUAGUUAUAACCAAGCUGACU-------------- l=31 a=1 

mb-01011
ax-1011111
ku-01
ss-111111101110
fn-111
